Log of installing ATTPC-ROOT (Yassid’s version) on CRC Notre Dame

Well, below does not work yet !!!!!!!!! I absolutely hate scientific software!!!!!

installing Fairsoft

before installation, my .bashrc file looks like below

# ~/.bashrc: executed by bash(1) for non-login shells.
# see /usr/share/doc/bash/examples/startup-files (in the package bash-doc)
# for examples

# If not running interactively, don't do anything
case $- in
    *i*) ;;
      *) return;;
esac

if [ -r /opt/crc/Modules/current/init/bash ]; then
        source /opt/crc/Modules/current/init/bash
fi

# don't put duplicate lines or lines starting with space in the history.
# See bash(1) for more options
HISTCONTROL=ignoreboth

# append to the history file, don't overwrite it
shopt -s histappend

# for setting history length see HISTSIZE and HISTFILESIZE in bash(1)
HISTSIZE=1000
HISTFILESIZE=2000

# check the window size after each command and, if necessary,
# update the values of LINES and COLUMNS.
shopt -s checkwinsize

# If set, the pattern "**" used in a pathname expansion context will
# match all files and zero or more directories and subdirectories.
#shopt -s globstar

# make less more friendly for non-text input files, see lesspipe(1)
[ -x /usr/bin/lesspipe ] && eval "$(SHELL=/bin/sh lesspipe)"

# set variable identifying the chroot you work in (used in the prompt below)
if [ -z "${debian_chroot:-}" ] && [ -r /etc/debian_chroot ]; then
    debian_chroot=$(cat /etc/debian_chroot)
fi

# set a fancy prompt (non-color, unless we know we "want" color)
case "$TERM" in
    xterm-color|*-256color) color_prompt=yes;;
esac

# uncomment for a colored prompt, if the terminal has the capability; turned
# off by default to not distract the user: the focus in a terminal window
# should be on the output of commands, not on the prompt
#force_color_prompt=yes

if [ -n "$force_color_prompt" ]; then
    if [ -x /usr/bin/tput ] && tput setaf 1 >&/dev/null; then
	# We have color support; assume it's compliant with Ecma-48
	# (ISO/IEC-6429). (Lack of such support is extremely rare, and such
	# a case would tend to support setf rather than setaf.)
	color_prompt=yes
    else
	color_prompt=
    fi
fi

if [ "$color_prompt" = yes ]; then
    PS1='${debian_chroot:+($debian_chroot)}\[\033[01;32m\]\u@\h\[\033[00m\]:\[\033[01;34m\]\w\[\033[00m\]\$ '
else
    PS1='${debian_chroot:+($debian_chroot)}\u@\h:\w\$ '
fi
unset color_prompt force_color_prompt

# If this is an xterm set the title to user@host:dir
case "$TERM" in
xterm*|rxvt*)
    PS1="\[\e]0;${debian_chroot:+($debian_chroot)}\u@\h: \w\a\]$PS1"
    ;;
*)
    ;;
esac

# enable color support of ls and also add handy aliases
if [ -x /usr/bin/dircolors ]; then
    test -r ~/.dircolors && eval "$(dircolors -b ~/.dircolors)" || eval "$(dircolors -b)"
    alias ls='ls --color=auto'
    #alias dir='dir --color=auto'
    #alias vdir='vdir --color=auto'

    alias grep='grep --color=auto'
    alias fgrep='fgrep --color=auto'
    alias egrep='egrep --color=auto'
fi

# colored GCC warnings and errors
#export GCC_COLORS='error=01;31:warning=01;35:note=01;36:caret=01;32:locus=01:quote=01'

# some more ls aliases
alias ll='ls -alF'
alias la='ls -A'
alias l='ls -CF'

# Add an "alert" alias for long running commands.  Use like so:
#   sleep 10; alert
alias alert='notify-send --urgency=low -i "$([ $? = 0 ] && echo terminal || echo error)" "$(history|tail -n1|sed -e '\''s/^\s*[0-9]\+\s*//;s/[;&|]\s*alert$//'\'')"'

# Alias definitions.
# You may want to put all your additions into a separate file like
# ~/.bash_aliases, instead of adding them here directly.
# See /usr/share/doc/bash-doc/examples in the bash-doc package.

if [ -f ~/.bash_aliases ]; then
    . ~/.bash_aliases
fi

# enable programmable completion features (you don't need to enable
# this, if it's already enabled in /etc/bash.bashrc and /etc/profile
# sources /etc/bash.bashrc).
if ! shopt -oq posix; then
  if [ -f /usr/share/bash-completion/bash_completion ]; then
    . /usr/share/bash-completion/bash_completion
  elif [ -f /etc/bash_completion ]; then
    . /etc/bash_completion
  fi
fi

module load cmake/3.6.3

#module load cuda/7.5 # /8.0
module load git
module load geant/4.10.2.2

#module load graphviz
#module load intel/16.0
#module load gcc/5.2.0
# define env variable

export VIMRUNTIME=~/.local/usr/share/vim/vim80


export LD_LIBRARY_PATH=~/.local/usr/local/lib:$LD_LIBRARY_PATH
export LD_LIBRARY_PATH=~/.local/lapack-3.6.1/BUILD/lib:$LD_LIBRARY_PATH
export PATH=~/.local/usr/bin:$PATH
export PATH=~/.local/usr/local/bin:$PATH
export PATH=$HOME/MySQL/bin:$PATH
export PATH=$HOME/MySQL/scripts:$PATH
export PATH=/afs/crc.nd.edu/user/j/jlai1/fair_install/FairSoftInst/bin:$PATH
export CPATH=~/.local/usr/local/include:$CPATH

then, install libxml2 by

git clone git://git.gnome.org/libxml2
cd libxml2/
./autogen.sh
## set the prefix to the location of your local installation directory
./configure --prefix=/afs/crc.nd.edu/user/j/jlai1/.local/usr
make
make install

then download fairsoft and do the following

mkdir ~/fair_install
cd ~/fair_install
mkdir FairSoftInst
git clone -b dev https://github.com/FairRootGroup/FairSoft.git
cd FairSoft
## give the version of latest root
export ROOTVERSION=v6-10-02
./configure.sh
# 1) gcc (on Linux) 5) Clang (on OSX)
# 2) No Debug Info
# 3) yes, root6 please
# 4) Internet (install G4 files from internet)
# 5) No python 
# path: I give full directory of FairSoftInst

After the installation, add to your .bashrc file

export SIMPATH=/afs/crc.nd.edu/user/j/jlai1/fair_install/FairSoftInstexport PATH=/afs/crc.nd.edu/user/j/jlai1/fair_install/FairSoftInst/bin:$PATH 

installing FairROOT

then I did the following

## not quite sure if the following line is needed
export ROOTVERSION=v6-10-02
cd ~/fair_install
git clone -b dev https://github.com/FairRootGroup/FairRoot.git
cd FairRoot
mkdir build
cd build
cmake -DCMAKE_INSTALL_PREFIX="~/fair_install/FairRootInst" ..
make
make install

well………….. the test should me that none of the tests are passed, so I have to way to see if the installation is successful, but at least there were no errors.

 

 

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